All functions
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BERT
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BERT: Biomass Estimation for Research on Toothfish |
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catch_data_sim_RB
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Simulated catch data from hypothetical Research blocks for vignette examples |
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catch_data_sim_RefArea
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Simulated catch data from Reference Areas for vignette examples |
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cpue_bio
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CPUE Seabed area analogy |
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cpue_bootstrap
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Estimate confidence intervals using a non-parametric bootstrap. |
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CPUE_seabed
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CPUE Seabed area analogy |
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est_fish_weight
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Estimate tagged fish weight from fish lengths |
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extract_catch_data_cpue_est
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Extract haul data |
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extract_catch_data_tag_est
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Extract haul data |
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extract_recaptures_season
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Extract and reformat release and recapture data |
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is.integer0
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Test for integer zero |
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length_weight_data_sim_RB
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Simulated tagged fish length and weight data from hypothetical Research blocks for vignette examples |
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length_weight_data_sim_RefArea
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Simulated tagged fish length and weight data from hypothetical Reference Areas for vignette examples |
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load_data
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Load CCAMLR data extracts |
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multi_release
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Multiple tag release estimate of population size |
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pars
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Parameters for specifying multiple release tag model |
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chapman_n chapman_wt petersen
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Petersen estimators |
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print
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Print method for single release, single recapture models |
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RB_seabed_area
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Research Block Seabed Area |
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recapture_data_sim_RB
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Simulated tagged fish recapture data from hypothetical Research blocks for vignette examples |
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Ref_area_seabed_area
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Reference Area Seabed Area |
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release_data_sim_RB
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Simulated tagged fish release data from hypothetical Research blocks for vignette examples |
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release_data_sim_RefArea
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Simulated tagged fish release data from Reference Areas for vignette examples |
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single_release
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Single tag release estimate of population size |
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specify_params
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Specify parameters for tag-based biomass estimate |
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summary
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S3 method for bootstrapped confidence intervals |
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summary
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S3 method for bootstrapped confidence intervals |
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summary
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S3 method for bootstrapped confidence intervals |
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summary
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Summary method for single release, single recapture models |
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tag_bootstrap
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Bootstrap method for single release tag-return studies |