All functions

BERT

BERT: Biomass Estimation for Research on Toothfish

catch_data_sim_RB

Simulated catch data from hypothetical Research blocks for vignette examples

catch_data_sim_RefArea

Simulated catch data from Reference Areas for vignette examples

cpue_bio

CPUE Seabed area analogy

cpue_bootstrap

Estimate confidence intervals using a non-parametric bootstrap.

CPUE_seabed

CPUE Seabed area analogy

est_fish_weight

Estimate tagged fish weight from fish lengths

extract_catch_data_cpue_est

Extract haul data

extract_catch_data_tag_est

Extract haul data

extract_recaptures_season

Extract and reformat release and recapture data

is.integer0

Test for integer zero

length_weight_data_sim_RB

Simulated tagged fish length and weight data from hypothetical Research blocks for vignette examples

length_weight_data_sim_RefArea

Simulated tagged fish length and weight data from hypothetical Reference Areas for vignette examples

load_data

Load CCAMLR data extracts

multi_release

Multiple tag release estimate of population size

pars

Parameters for specifying multiple release tag model

chapman_n chapman_wt petersen

Petersen estimators

print

Print method for single release, single recapture models

RB_seabed_area

Research Block Seabed Area

recapture_data_sim_RB

Simulated tagged fish recapture data from hypothetical Research blocks for vignette examples

Ref_area_seabed_area

Reference Area Seabed Area

release_data_sim_RB

Simulated tagged fish release data from hypothetical Research blocks for vignette examples

release_data_sim_RefArea

Simulated tagged fish release data from Reference Areas for vignette examples

single_release

Single tag release estimate of population size

specify_params

Specify parameters for tag-based biomass estimate

summary

S3 method for bootstrapped confidence intervals

summary

S3 method for bootstrapped confidence intervals

summary

S3 method for bootstrapped confidence intervals

summary

Summary method for single release, single recapture models

tag_bootstrap

Bootstrap method for single release tag-return studies